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Bioinformatics. 2010 Nov 15;26(22):2927-8. doi: 10.1093/bioinformatics/btq562. Epub 2010 Oct 5.

GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop.

Author information

  • 1Banting and Best Department of Medical Research, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada.

Abstract

The GeneMANIA Cytoscape plugin brings fast gene function prediction capabilities to the desktop. GeneMANIA identifies the most related genes to a query gene set using a guilt-by-association approach. The plugin uses over 800 networks from six organisms and each related gene is traceable to the source network used to make the prediction. Users may add their own interaction networks and expression profile data to complement or override the default data.

AVAILABILITY AND IMPLEMENTATION:

The GeneMANIA Cytoscape plugin is implemented in Java and is freely available at http://www.genemania.org/plugin/.

PMID:
20926419
[PubMed - indexed for MEDLINE]
PMCID:
PMC2971582
Free PMC Article

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