Proteinase K (PK)-resistant core fragments of variably protease-sensitive prionopathy (VPSPr) and their comparison with the disease-associated prion protein (PrPDis) fragments associated with Gerstmann-Sträussler-Scheinker disease (GSS)-A117V. All brain homogenates were treated with increasing concentrations of PK and with peptide N-glycosidase F (PNGase F). (A) With 1E4, all immunoblots from cases with the 129VV, 129MM, and 129MV genotypes essentially show variably protease-sensitive prionopathy (VPSPr)-20, VPSPr17, and VPSPr7. However, the PK resistance of these bands varies according to the 129 genotype and the individual bands within the same genotype in a way roughly similar to that shown in Figure 3. (B) The immunoblots probed with 3F4 reveal 2 major bands in the 129MM and 129MV genotypes, which, however, exhibit a quite different pattern of resistance to PK in the 2 genotypes. As expected, no PK-resistant PrP bands are detected in the 129VV genotype. (C) Additional analysis of the core fragments following treatment with 25µg/ml of PK and PNGase, using the antibody anti-C to the PrP C-terminal residues 220–231. Compared to 1E4, anti-C demonstrates 4 bands of 20kDa, 18kDa, 12–13kDa, and 8kDa, respectively, of which only the 20kDa band has the same gel mobility as VPSPr20 detected with 1E4. The other 3 bands, including 18kDa, 12–13kDa, and 8kDa, do not match the bands detected with 1E4. (See text for explanation). (D) Brain homogenates from VPSPr-129MV, GSS117, and VPSPr-129 were treated with PK and PNGase F prior to Western blotting and probed with 1E4 (left panel), 3F4 (middle panel), and anti-C (right panel) antibodies. With monoclonal antibody 1E4, bands matching VPSPr20, VPSPr17, and VPSPr7 are detected in the GSS-A117V preparations, but the GSS-V117V bands immunoreact much less with 1E4 than the bands of VPSPr-129MV and VPSPr-129VV. The 23kDa band is seen more prominently in GSS-A117V. With 3F4, the VPSPr17 and VPSPr7 bands are shared by GSS-A117V and VPSPr-129MV, but the 20kDa band is missing in GSS-A117V. The VPSPr7 band is much less reactive in 129MV. As previously, the 129VV is not reactive with 3F4. Anti-C reveals apparently the same bands in all 3 preparations, but with significantly different ratios. M = methionine; V = valine.