Gene methylation of SFRP2, P16, DAPK1, HIC1, and MGMT and KRAS mutations in sporadic colorectal cancer

Cancer Genet Cytogenet. 2010 Sep;201(2):128-32. doi: 10.1016/j.cancergencyto.2010.05.019.

Abstract

The aim of this study was to investigate the methylation of the SFRP2, P16, DAPK1, HIC1, and MGMT genes, as well as the mutation of amino acid codons 12 and 13 of the KRAS gene in normal and tumor tissue DNA of patients diagnosed with sporadic colorectal cancer (SCRC). The methylation of gene regions and the KRAS mutations of normal (N) and tumor tissue (T) DNA obtained from 17 patients diagnosed with SCRC and 20 healthy controls were investigated using the polymerase chain reaction and reverse-hybridization methods. There was an Asp mutation in four patients, an Asp and Ser mutations in one patient in codon 12 of the KRAS gene, and an Asp mutation in codon 13 in eight patients. Overall promoter methylation (OPM) in the SFRP2 gene was observed in one N and four T, whereas partial promoter methylation (PPM) was observed in two N and five T. OPM in the P16 gene was present in one T. In the DAPK1 gene, OPM existed in seven T and five N, while PPM was present in two N. In the HIC1 gene, OPM was demonstrated in three T, while PPM was noted in two N; however, no methylation existed in N. In the MGMT gene, OPM occurred in five T and two N, and PPM was present in one T. KRAS mutations in Turkish patients with SCRC are similar to those of other population groups. Methylations in the genes, which underwent methylation analysis, were higher in T in comparison with N, and it has been suggested that significant results would be obtained by making a study with a larger population.

MeSH terms

  • Apoptosis Regulatory Proteins / genetics*
  • Calcium-Calmodulin-Dependent Protein Kinases / genetics*
  • Case-Control Studies
  • Colorectal Neoplasms / genetics*
  • Cyclin-Dependent Kinase Inhibitor p16
  • DNA Methylation*
  • DNA Modification Methylases / genetics*
  • DNA Repair Enzymes / genetics*
  • Death-Associated Protein Kinases
  • Female
  • Genes, ras*
  • Histocytochemistry
  • Humans
  • Kruppel-Like Transcription Factors / genetics*
  • Male
  • Membrane Proteins / genetics*
  • Microsatellite Instability
  • Mutation
  • Neoplasm Proteins / genetics*
  • Polymerase Chain Reaction
  • Proto-Oncogene Proteins / genetics
  • Proto-Oncogene Proteins p21(ras)
  • Tumor Suppressor Proteins / genetics*
  • ras Proteins / genetics

Substances

  • Apoptosis Regulatory Proteins
  • CDKN2A protein, human
  • Cyclin-Dependent Kinase Inhibitor p16
  • HIC1 protein, human
  • KRAS protein, human
  • Kruppel-Like Transcription Factors
  • Membrane Proteins
  • Neoplasm Proteins
  • Proto-Oncogene Proteins
  • SFRP2 protein, human
  • Tumor Suppressor Proteins
  • DNA Modification Methylases
  • MGMT protein, human
  • DAPK1 protein, human
  • Death-Associated Protein Kinases
  • Calcium-Calmodulin-Dependent Protein Kinases
  • Proto-Oncogene Proteins p21(ras)
  • ras Proteins
  • DNA Repair Enzymes