Inhibition of BMP9 signaling by RNAi-mediated knockdown of ALK1 and ALK2 gene expression. A, schematic representation of siRNA selection strategy for mouse ALK1 and ALK2. Detailed information about the pSOS system was previously described (35). B, selection of siRNAs targeting mouse ALK1 and ALK2. The target sites were subcloned and tested using the pSOS system. The resultant vectors were transfected into 293 cells, and knockdown of chimeric GFP/ALK1 or GFP/ALK2 expression was recorded 5 days after transfection. C, verification of ALK1 and ALK2 knockdown in C3H10T1/2 cells. Total RNA was collected from subconfluent transfected cells and subjected to qPCR analysis using primers corresponding to the 3′-UTR of mouse ALK1 and ALK2. All samples were normalized for GAPDH expression. D, inhibition of BMP R-Smad reporter activity by ALK1 and ALK2 knockdown in MSCs. Representative results of three independent experiments are shown. E, effect of silencing ALK1 and ALK2 expression on BMP9-induced ALP activity. Subconfluent C3H10T1/2 and C2C12 cells were co-infected with AdBMP9 and AdGFP or various titers of Ad-simALK1 and Ad-simALK2. ALP activity was measured at day 5 after infection. Each assay condition was done in triplicate. F, effect of silencing ALK1 and ALK2 expression on BMP9-induced ectopic ossification. C3H10T1/2 cells were co-infected with AdBMP9 and AdGFP, Ad-simALK1, or Ad-simALK2 for 15 h, collected, and subjected to subcutaneous injection into flanks of athymic mice. At 6 weeks, animals were sacrificed, and the ectopic bone masses were retrieved and subjected to H & E stain (panels i-iii) and Alcian blue stain (panels iv-vi). BM, mineralized bone matrix; CM, chondroid matrix; magnification, ×150.