2′-OMe but not MOE ASO induces an increase in Aif1 expression, a marker of microglial activation. The MOE ASO (MOE), a six-mismatch ASO (Mismatch), and the 2′-OMe ASO (2′-OMe) (for sequences, see the Materials and Methods) were delivered into the CNS of heterozygous type III SMA mice by ICV infusion for 7 d at the indicated doses (n = 5 for all doses, except for the 2′-OMe treatment at 100 μg per day, for which two mice died prematurely). On day 9, mice were euthanized, and the whole brain (A) and lumbar spinal cord (B) were collected for total RNA extraction. Aif1 mRNA levels were analyzed by real-time RT–PCR with specific primers and normalized to GAPDH mRNA. The data were further normalized to the saline controls (dose, 0 μg per day, white bars). MOE ASO gave no increase of Aif1 expression in the brain, and a 1.2-fold increase at only the highest dose (100 μg per day) in the lumbar spinal cord (P = 0.01). 2′-OMe ASO caused a large increase in Aif1 mRNA levels at doses ≥10 μg per day in the spinal cord, and at doses of 100 μg per day in the brain. Error bars represent standard deviations. (*) P < 0.05; (**) P < 0.01; (***) P < 0.001, compared with the saline controls.