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Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):12998-3003. doi: 10.1073/pnas.0915003107. Epub 2010 Jul 6.

Genetic flexibility of regulatory networks.

Author information

  • 1Department of Genetics, Eötvös Loránd University, H-1117, Budapest, Hungary.

Abstract

Gene regulatory networks are based on simple building blocks such as promoters, transcription factors (TFs) and their binding sites on DNA. But how diverse are the functions that can be obtained by different arrangements of promoters and TF binding sites? In this work we constructed synthetic regulatory regions using promoter elements and binding sites of two noninteracting TFs, each sensing a single environmental input signal. We show that simply by combining these three kinds of elements, we can obtain 11 of the 16 Boolean logic gates that integrate two environmental signals in vivo. Further, we demonstrate how combination of logic gates can result in new logic functions. Our results suggest that simple elements of transcription regulation form a highly flexible toolbox that can generate diverse functions under natural selection.

PMID:
20615961
[PubMed - indexed for MEDLINE]
PMCID:
PMC2919941
Free PMC Article

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