Mapping of GOr mutations to yqhC using transposon insertions. (A) Using nearby TnphoA-132 insertions isolated as described in Materials and Methods, the locations of yqhC mutations were determined based on their cotransductional linkages. The candidate locus was found at ∼70 min on the E. coli linkage map, with the physical coordinates shown underneath. Using insertions located close to the mutations, i.e., hybB (70% cotransduction frequency), ygiN (43%), yghZ (95%), and yqhE (98%), the candidate locus was further narrowed down to the region containing the yghB, yqhC, and yqhD genes. Eventually, the mutation was revealed by sequencing the yqhC gene (asterisk), a member of the AraC transcriptional activator family. (B) YqhC is a homolog of the AraC transcriptional activator with 13.6% amino acid identity based on alignment with AlignX (program provided in Vector NTI). The point mutations in Table 2 are marked by asterisks, with α-helices (cylinders) and β-sheets (arrows) shown as predicted by Jpred3 (http://www.compbio.dundee.ac.uk/www-jpred/). The predicted regulatory and DNA-binding domains are shown with solid and dashed lines, respectively (http://www.genome.jp/kegg/).