Display Settings:

Format

Send to:

Choose Destination
See comment in PubMed Commons below
Bioinformatics. 2010 Jul 15;26(14):1800-1. doi: 10.1093/bioinformatics/btq250. Epub 2010 May 26.

A UIMA wrapper for the NCBO annotator.

Author information

  • 1Center for Computational Pharmacology, University of Colorado School of Medicine, Aurora, CO, USA. chris.roeder@ucdenver.edu

Abstract

SUMMARY:

The Unstructured Information Management Architecture (UIMA) framework and web services are emerging as useful tools for integrating biomedical text mining tools. This note describes our work, which wraps the National Center for Biomedical Ontology (NCBO) Annotator-an ontology-based annotation service-to make it available as a component in UIMA workflows.

AVAILABILITY:

This wrapper is freely available on the web at http://bionlp-uima.sourceforge.net/ as part of the UIMA tools distribution from the Center for Computational Pharmacology (CCP) at the University of Colorado School of Medicine. It has been implemented in Java for support on Mac OS X, Linux and MS Windows.

PMID:
20505005
[PubMed - indexed for MEDLINE]
PMCID:
PMC2894505
Free PMC Article
PubMed Commons home

PubMed Commons

0 comments
How to join PubMed Commons

    Supplemental Content

    Full text links

    Icon for HighWire Icon for PubMed Central
    Loading ...
    Write to the Help Desk