Sequence comparisons of cluster-binding domain of Rieske-type proteins. In A, sequences of Aro-Rieske from Ralstonia sp. 22 (Aro_S22, GQ904715), Rhizobium NT-26 (Aro_NT26, AAR05655.1), Alcaligenes faecalis (Aro_Alcfa, AAQ19839.1), Chloroflexus aurantiacus (Aro_Chlau, YP_001634828.1), Pyrobaculum calidifontis (Aro_Pyrca, YP_001056257.1), and Aeropyrum pernix K1 (AroB_Aerpe, NP_148694) are compared with sequences of Rieske-cyt b-Rieske from Rhodobacter sphaeroides (PetA_Rhosp, YP_354476.1), Thermus thermophilus (PetA_Theth, AAB91482.1) and Sulfolobus acidocaldarius (soxF_Sulac, CAA88318), of naphthalene dioxygenase-Rieske from Pseudomonas putida (NDO_Psepu, P0A110.1), and of BphF-Rieske from Burkholderia sp. LB400 (BphF_Bursp, AAB63428.1). The reduction potential-influencing Ser and Tyr residues (and eventual substitute) are marked by vertical black arrows. Fully conserved His and Cys residues binding the cluster are marked in boxes. Cys residues considered to form a disulfide bond in Rieske proteins are marked by gray arrows. In B, a schematic phylogenetic tree, reconstructed from detailed phylogenetic analysis (10), represents the distribution of the two important phylogenetic markers, i.e. the Ser and the disulfur bond (S-S) into the Rieske-cyt b and Aro clades in bacteria and archaea.