Lipin 1 forms a complex with both NFATc4 and PPARα on DNA in vitro and is present at the promoter of NFAT target genes in vivo. (A) BHK cells were transfected with expression vectors for FLAG-tagged NFATc4, HA-tagged lipin 1b, or both. The DNA bound complexes were then analyzed by EMSA. The first lane contains labeled oligonucleotide only, while the second lane is lysates from EGFP-transfected cells. The free probe (free), NFATc4-DNA complex (NFAT), and the lipin 1-NFATc4-DNA complex (Lip-NFAT) and antibody-induced supershift (Supershift) are indicated. The right panel shows the specificity of NFAT binding via competition with 100-fold of excess unlabeled oligonucleotide (lanes C) and verifies the identity of the NFATc4 and lipin 1-NFATc4 bands by preincubation with antibodies specific for the epitope tags of NFATc4 and lipin 1, FLAG (lane F) and HA (lane H), respectively. (B) BHK cells were transfected with expression vectors for FLAG-tagged PPARα and HA-tagged lipin 1b. Gel mobility shift assays performed as described for panel A using an oligonucleotide derived from the PPARα binding site in the apoE III promoter. (C) BHK cells were transfected and binding reactions performed as described above. Where indicated, the DNA-binding reaction was supplemented with recombinant lipin 1 (L) or recombinant lipin 1 that was heat inactivated by boiling for 10 min (Δ). (D) Fully differentiated 3T3-L1 adipocytes were infected with adenovirus expressing LacZ shRNA (LacZ), lipin 1 shRNA (shRNA1), or HA-tagged lipin 1. At 3 to 4 days after infection, adipocytes were harvested for protein analysis. The top panel shows the results of Western blot analysis of lipin 1 expression in LacZ shRNA (LacZ)-, lipin 1 shRNA (shRNA1)-, or HA-tagged lipin 1b-expressing cells. The bottom panel shows results obtained with total Mg2+-dependent PAP in adenovirus-infected cells. (E) 3T3-L1 adipocytes infected with adenovirus expressing LacZ shRNA (LacZ), lipin 1 shRNA (shRNA1), or HA-tagged lipin 1 were used to prepare nuclear extracts to analyze NFATc4 binding activity. Where indicated, cold competitor oligonucleotide or antibodies to endogenous NFATc4 were included in the reactions. (F) Semiquantitative ChIP assays for the Tnf, Fabp4, and Gapdh promoters in 3T3-L1 cells infected with adenovirus expressing shRNA targeting LacZ or lipin 1. Either no antibody, antibodies specific for NFATc4, lipin 1, or nonimmune antibodies were used to immunoprecipitate chromatin-bound proteins from untreated, control cells (rows C) or cells treated with A23187 (1 μM) plus PMA (50 nM) for 18 h (A+P). PCR was performed for the indicated number of cycles using primer pairs specific for the Tnf, Fabp4, and Gapdh promoters. Input is PCR amplification of 1% of the amount of lysates used for the immunoprecipitation. The results in the figure are representative of two independent experiments.