Sequence and structure of the monomer unit in Aβ40 and Aβ42 fibrils. (a) Sequence of Aβ42 that is derived from human APP. (b) Structural constraints in Aβ40 and Aβ42 fibrils. NMR measurements of Aβ40 fibrils have shown that residues 1–10 are unstructured and residues 11–40 adopt a β-turn-β fold 19,20. Side-chain packing is observed between Phe19 and Ile32/Leu34/Val36, between Gln15 and Val36, and between His13 and Val40 (blue dashed lines). In Aβ42 fibrils, residues 1–17 may be unstructured (in gray) with residues 18–42 forming a β-turn-β fold 14. Molecular contacts have been reported within the monomer unit of Aβ42 fibrils between Phe19 and Gly38 (red dashed line) 14 and between Met35 and Ala42 (orange dashed line) 18. In both Aβ40 and Aβ42, the turn conformation is stabilized by hydrophobic interactions (green residues) and by a salt bridge between Asp23 and Lys28 (black dashed line).

Characterization of Aβ42 oligomers, protofibrils and fibrils. (a) TEM of Aβ42 oligomers incubated at 4 °C for 6 h. (b) TEM of Aβ42 protofibrils incubated at 37 °C for 6 h; (c) TEM of Aβ42 fibrils incubated at 37 °C for 12 days. (d) Native gel electrophoresis showing that oligomers contain a single band at ∼20 kDa and that increasing the SDS content can disrupt the oligomeric conformation. (e) Sodium dodecylsulfate (SDS)-polyacrylamide gel electrophoresis of Aβ42 oligomers incubated at 4 °C for 6 h (lane 1) and protofibrils incubated at 37 °C for 6 h (lane 2). Aβ42 was detected using the monoclonal 6E10 anti-Aβ antibody. (f) Cell viability assay of primary cultures of murine cortical neurons treated with Aβ42 oligomers incubated at 4 °C for 6 h or protofibrils incubated at 37 °C for 6 h (n=5). Results represent the mean ± sem, * p < 0.02, ** p <0.001.

Parallel and in-register orientation of β-strands in Aβ42 fibrils. (a) Labeling scheme to test for parallel and in-register orientations of the N- and C-terminal β-strands in Aβ42 fibrils and oligomers using an equimolar mixture of Aβ42-AG1 and Aβ42-AG2 peptides. The red dashed line corresponds to the 4.7 Å distance expected between adjacent Ala21 residues and adjacent Gly37 residues along the fibril axis. (b) Rows through the Ala21 ¹³CO diagonal resonance in DARR NMR spectra of Aβ42 fibrils (red trace) and oligomers (black trace). A distinct Ala21 ¹³CO… Ala21 ¹³Cα cross-peak is observed in the fibril conformation, but not the oligomer conformation. (c) Rows through the Gly37 ¹³CO diagonal resonance in DARR NMR spectra of Aβ42 fibrils (red trace) and oligomers (black trace). A distinct Gly37 ¹³CO… Gly37 ¹³Cα cross-peak is observed in the fibril conformation, but not in the oligomer conformation. Smaller natural abundance (na) cross-peaks are observed in the oligomer samples. Spinning side bands (ssb) due to magic angle spinning are indicated. The data indicate that Aβ42 fibrils have β-strands in a parallel and in-register orientation, but oligomers do not.

Turn structure in Aβ42 fibrils and neurotoxic oligomers. (a) Above, one-dimensional ¹³C-NMR spectrum showing chemical shift assignments for Phe19, Leu34 and Gly38 in Aβ42 fibrils formed from Aβ42-FLG peptides. Natural abundance (na) cross-peaks are marked with an asterisk. Below, region of the two-dimensional DARR NMR spectrum showing specific ¹³C…¹³C molecular contacts between Phe19 and Leu34 (red box) and no contact between Phe19 and Gly38 (blue box) in Aβ42 fibrils. (b) Above, one dimensional ¹³C-spectrum showing chemical shift assignments for Phe19, Leu34, and Gly38 in Aβ42 oligomers formed from Aβ42-FLG peptides. Below, two-dimensional DARR NMR spectrum showing a specific ¹³C…¹³C contact between Phe19 and Leu34 in Aβ42 oligomers. Due to the chemical shift overlap between the Cα of Gly38 and the Cβ of Leu34 in the oligomers, we cannot rule out Phe19-Gly38 contacts in a minor population of Aβ42 peptides. (c) Molecular model of the turn conformation in Aβ42 highlighting the Phe19-Leu34 contact (see also Supplementary Results 1).

β-strands are staggered in Aβ42 fibrils. (a) Above, one dimensional ¹³C-spectrum showing chemical shift assignments for His13/14, Gln15, Gly37 and Ala42 in Aβ42 fibrils formed from an equimolar mixture of Aβ42-HQA:Aβ42-G37 peptides. Natural abundance ¹³C assignments are marked with an asterisk. Below, region of the two dimensional DARR NMR spectrum showing specific ¹³C…¹³C inter-molecular contacts between Gln15 and Gly37 (red arrow), intra-molecular contacts between Gln15 and His13/14 (orange arrow), and no contact between Gln15 and Ala42, indicating a staggered, domain-swapped architecture. (b) Model of staggering between the N- and C-terminal β-strands at the Gln15-Gly37 contact in Aβ42 fibrils. (c) Above, one dimensional ¹³C-spectrum showing chemical shift assignments for His13/14, Gln15, Gly37 and Ala42 in Aβ42 oligomers formed from an equimolar mixture of Aβ42-HQA:Aβ42-G37 peptides. Below, two dimensional DARR NMR spectrum showing no molecular contacts between Gln15 and His13/14, Gly37, or Ala42 (red arrow), indicating the absence of a staggered, domain swapped architecture in Aβ42 oligomers. Only a small natural abundance (na) cross-peak is observed (gray arrow).

Molecular models of Aβ42 oligomers and fibrils. (a) Schematic of the monomer within the oligomer complex of Aβ42. Solid-state NMR measurements show that Phe19 is in contact with Leu34, while amide exchange measurements suggest there are solvent accessible turns at His13–Gln15, Gly25–Gly29, and Gly37–Gly38. (b) Schematic of the Aβ42 pentamer. The composition of the oligomer is based on SEC and AFM. The orientation of the C-terminus toward the center of the pentamer is based on solvent accessibility. A similar orientation for the hexamer has been proposed by Berstein et al.32. (c) Three-dimensional image of single-touch AFM measurements of Aβ42 oligomers. (d) Schematic of the monomer within Aβ42 fibrils. (e) Schematic showing the parallel and in-register packing and staggering of the individual β-strands within Aβ42 fibrils. A single protofilament is shown. Mature fibrils may be formed by the association of 2–3 protofilaments.