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Bioinformatics. 2010 May 1;26(9):1256-7. doi: 10.1093/bioinformatics/btq103. Epub 2010 Mar 10.

PanCGHweb: a web tool for genotype calling in pangenome CGH data.

Author information

  • 1Radboud University Medical Centre, Nijmegen Center for Molecular Life Sciences, Nijmegen, The Netherlands.

Abstract

A pangenome is the total of genes present in strains of the same species. Pangenome microarrays allow determining the genomic content of bacterial strains more accurately than conventional comparative genome hybridization microarrays. PanCGHweb is the first tool that effectively calls genotype based on pangenome microarray data.

AVAILABILITY:

PanCGHweb, the web tool is accessible from: http://bamics2.cmbi.ru.nl/websoftware/pancgh/.

PMID:
20219865
[PubMed - indexed for MEDLINE]
PMCID:
PMC2859125
Free PMC Article
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