A pooling-based genome-wide association study implicates the p73 gene in chronic rhinosinusitis

J Otolaryngol Head Neck Surg. 2010 Apr;39(2):188-95.

Abstract

Background: p73 is a gene that may confer a genetic susceptibility to the development of chronic rhinosinusitis.

Objective: To verify an association between p73 and chronic rhinosinusitis, identified in a pooling-based genome-wide association study in a human population.

Methods: Prospective recruitment of 206 patients and 196 postal code-matched controls. DNA extraction, followed by pooling, high-density single nucleotide polymorphism (SNP) genotyping, and individual genotyping, was carried out. Gene sequencing was carried out in 10 patients and 1 control.

Results: Statistical analysis of SNP rs3765731 revealed a significant difference in minor allele frequency between the case and control groups. Minor allele A was more frequent in the healthy group, with an odds ratio of 0.6533, whereas G had a higher association with the disease state. Subgroup analysis of allele frequencies showed A to be associated with a lesser likelihood of developing chronic rhinosinusitis. Homozygous AA patients with severe disease had a sevenfold lesser risk of chronic rhinosinusitis compared with GG homozygotes (odds ratio 0.14). Sequencing did not reveal any amino acid changes conferring a change of function in secreted proteins.

Conclusion: We have demonstrated an association between rs3765731 and chronic rhinosinusitis. Minor allele A has a protective effect compared with major allele G. Interaction with other signaling proteins and induction of other genes will better explain this mechanism.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Case-Control Studies
  • Chronic Disease
  • DNA-Binding Proteins / genetics*
  • Female
  • Gene Frequency
  • Genetic Predisposition to Disease
  • Genome-Wide Association Study*
  • Genotype
  • Humans
  • Linkage Disequilibrium
  • Male
  • Middle Aged
  • Nuclear Proteins / genetics*
  • Odds Ratio
  • Polymorphism, Single Nucleotide*
  • Prospective Studies
  • Rhinitis / genetics*
  • Sinusitis / genetics*
  • Tumor Protein p73
  • Tumor Suppressor Proteins / genetics*

Substances

  • DNA-Binding Proteins
  • Nuclear Proteins
  • TP73 protein, human
  • Tumor Protein p73
  • Tumor Suppressor Proteins