Revisiting glutaraldehyde cross-linking: the case of the Arg-Lys intermolecular doublet

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Mar 1;66(Pt 3):225-8. doi: 10.1107/S1744309109054037. Epub 2010 Feb 23.

Abstract

In addition to the common use of glutaraldehyde to nonspecifically cross-link protein crystals through lysine residues disposed on the surface of the protein, the use of gentle vapour diffusion of glutaraldehyde offers a convenient way to limit polymerization and to allow slow diffusion throughout the crystal. In the case of trimeric barnase crystals, a specific cross-link was observed between an lysine side chain and an arginine side chain that were spatially disposed at the ideal distance on the protein surface in the three monomers. Here, the direct observation of a specific Lys-Arg cross-link site is reported and a mechanism is proposed for the reaction.

MeSH terms

  • Arginine / chemistry
  • Bacillus / enzymology*
  • Bacterial Proteins
  • Cross-Linking Reagents / chemistry*
  • Crystallography, X-Ray
  • Glutaral / chemistry*
  • Lysine / chemistry
  • Models, Molecular
  • Protein Structure, Tertiary
  • Ribonucleases / chemistry*

Substances

  • Bacterial Proteins
  • Cross-Linking Reagents
  • Arginine
  • Ribonucleases
  • Bacillus amyloliquefaciens ribonuclease
  • Lysine
  • Glutaral

Associated data

  • PDB/3KCH