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Compensatory evolution in mitochondrial tRNAs navigates valleys of low fitness.
Meer MV, Kondrashov AS, Artzy-Randrup Y, Kondrashov FA.
Nature. 2010 Mar 11;464(7286):279-82. Epub 2010 Feb 24.
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Measurements of spontaneous rates of mutations in the recent past and the near future.
Kondrashov FA, Kondrashov AS.
Philos Trans R Soc Lond B Biol Sci. 2010 Apr 27;365(1544):1169-76. Review.
Sequence space and the ongoing expansion of the protein universe.
Povolotskaya IS, Kondrashov FA.
Nature. 2010 Jun 17;465(7300):922-6. Epub 2010 May 19.
The evolution of gene duplications: classifying and distinguishing between models.
Innan H, Kondrashov F.
Nat Rev Genet. 2010 Feb;11(2):97-108. Epub 2010 Jan 6. Review.
Translation termination in pyrrolysine-utilizing archaea.
Alkalaeva E, Eliseev B, Ambrogelly A, Vlasov P, Kondrashov FA, Gundllapalli S, Frolova L, Söll D, Kisselev L.
FEBS Lett. 2009 Nov 3;583(21):3455-60. Epub 2009 Sep 29.
Evolution of a behavior-linked microsatellite-containing element in the 5' flanking region of the primate AVPR1A gene.
Donaldson ZR, Kondrashov FA, Putnam A, Bai Y, Stoinski TL, Hammock EA, Young LJ.
BMC Evol Biol. 2008 Jun 23;8:180.
Hypermutable non-synonymous sites are under stronger negative selection.
Schmidt S, Gerasimova A, Kondrashov FA, Adzhubei IA, Kondrashov AS, Sunyaev S.
PLoS Genet. 2008 Nov;4(11):e1000281. Epub 2008 Nov 28. Erratum in: PLoS Genet. 2008 Nov;4(11).doi.org/10.1371/annotation/a81b1fab-890c-447b-a308-5bc8ca3eb21d.. Adzuhbei, Ivan A [corrected to Adzhubei, Ivan A].
Nested genes and increasing organizational complexity of metazoan genomes.
Assis R, Kondrashov AS, Koonin EV, Kondrashov FA.
Trends Genet. 2008 Oct;24(10):475-8. Epub 2008 Sep 5.
Conversion and compensatory evolution of the gamma-crystallin genes and identification of a cataractogenic mutation that reverses the sequence of the human CRYGD gene to an ancestral state.
Plotnikova OV, Kondrashov FA, Vlasov PK, Grigorenko AP, Ginter EK, Rogaev EI.
Am J Hum Genet. 2007 Jul;81(1):32-43. Epub 2007 May 16.
Selection for functional uniformity of tuf duplicates in gamma-proteobacteria.
Kondrashov FA, Gurbich TA, Vlasov PK.
Trends Genet. 2007 May;23(5):215-8. Epub 2007 Mar 23.
A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures.
Popadin KY, Mamirova LA, Kondrashov FA.
BMC Bioinformatics. 2007 Nov 14;8:441.
Extensive parallelism in protein evolution.
Bazykin GA, Kondrashov FA, Brudno M, Poliakov A, Dubchak I, Kondrashov AS.
Biol Direct. 2007 Aug 16;2:20.
Complete mitochondrial genome and phylogeny of Pleistocene mammoth Mammuthus primigenius.
Rogaev EI, Moliaka YK, Malyarchuk BA, Kondrashov FA, Derenko MV, Chumakov I, Grigorenko AP.
PLoS Biol. 2006 Mar;4(3):e73. Epub 2006 Feb 7.
Role of selection in fixation of gene duplications.
J Theor Biol. 2006 Mar 21;239(2):141-51. Epub 2005 Oct 20. Review.
Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis.
Babenko VN, Basu MK, Kondrashov FA, Rogozin IB, Koonin EV.
BMC Cancer. 2006 Feb 9;6:36.
Evolution of glyoxylate cycle enzymes in Metazoa: evidence of multiple horizontal transfer events and pseudogene formation.
Kondrashov FA, Koonin EV, Morgunov IG, Finogenova TV, Kondrashova MN.
Biol Direct. 2006 Oct 23;1:31.
[The analysis of monomer sequences in protein and tRNA and the manifestation of the compensation of pathogenic deviations in their evolution].
Kondrashov FA.
Biofizika. 2005 May-Jun;50(3):389-95. Review. Russian.
Prediction of pathogenic mutations in mitochondrially encoded human tRNAs.
Hum Mol Genet. 2005 Aug 15;14(16):2415-9. Epub 2005 Jul 13.
A universal trend of amino acid gain and loss in protein evolution.
Jordan IK, Kondrashov FA, Adzhubei IA, Wolf YI, Koonin EV, Kondrashov AS, Sunyaev S.
Nature. 2005 Feb 10;433(7026):633-8. Epub 2005 Jan 19. Erratum in: Nature. 2005 May 26;435(7041):528.
[The convergent evolution of the secondary structure of mitochondrial cysteine tRNA in the nine-banded armadillo Dasypus novemcinctus].
Biofizika. 2005 May-Jun;50(3):396-403. Russian.
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