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    Curr Protoc Mol Biol. 2010 Jan;Chapter 4:Unit 4.11.1-13.

    RNA-Seq: a method for comprehensive transcriptome analysis.

    Source

    Molecular, Cellular, and Developmental Biology Department, Yale University, New Haven, Connecticut, USA.

    Abstract

    A recently developed technique called RNA Sequencing (RNA-Seq) uses massively parallel sequencing to allow transcriptome analyses of genomes at a far higher resolution than is available with Sanger sequencing- and microarray-based methods. In the RNA-Seq method, complementary DNAs (cDNAs) generated from the RNA of interest are directly sequenced using next-generation sequencing technologies. The reads obtained from this can then be aligned to a reference genome in order to construct a whole-genome transcriptome map. RNA-Seq has been used successfully to precisely quantify transcript levels, confirm or revise previously annotated 5' and 3' ends of genes, and map exon/intron boundaries. This unit describes protocols for performing RNA-Seq using the Illumina sequencing platform.

    PMID:
    20069539
    [PubMed - indexed for MEDLINE]

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