My NCBISign In

Display Settings:

Format

Send to:

Choose Destination
    PLoS Curr. 2009 Sep 22;1:RRN1040.

    SeqMonitor: influenza analysis pipeline and visualization.

    Macdonald N, Parks D, Beiko R.

    Source

    Faculty of Computer Science, Dalhousie University, Halifax, NS.

    Abstract

    Unprecedented sequencing effort has led to daily submissions of influenza genomes to public repositories such as the NCBI GenBank. With the decreasing cost of genome sequencing, it is expected that rapidly evolving viruses such as influenza will be sampled in even greater depth in the future. Keeping analyses up to date and managing this data is a prime concern for researchers and public-health officials alike. We have developed an influenza sequence pipeline, polymorphism data warehouse, and an interactive web-based analysis program to assist in managing the flow of sequence data. The system provides a framework for studying polymorphic associations with various metadata, for downloading subsets based on metadata criteria, as well as for tracking polymorphisms geographically and temporally. SeqMonitor is accessible at http://ratite.cs.dal.ca/SeqMonitor.

    PMID:
    20025203
    [PubMed]
    PMCID:
    PMC2762774
    Free PMC Article

    Images from this publication.See all images (3) Free text

    Figure 1.
    Figure 3
    Figure 2.

    LinkOut - more resources

    Full Text Sources

      Supplemental Content

      Icon for PubMed Central

      Save items

      loading

      Related citations in PubMed

      • Using GenBank. [Methods Mol Biol. 2007]
        Using GenBank.
        Wheeler D. Methods Mol Biol. 2007; 406:23-59.
      • GenBank. [Nucleic Acids Res. 2005]
        GenBank.
        Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. Nucleic Acids Res. 2005 Jan 1; 33(Database issue):D34-8.
      • GenBank: update. [Nucleic Acids Res. 2004]
        GenBank: update.
        Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. Nucleic Acids Res. 2004 Jan 1; 32(Database issue):D23-6.
      • Final Report on Carcinogens Background Document for Formaldehyde. [Rep Carcinog Backgr Doc. 2010]
        Final Report on Carcinogens Background Document for Formaldehyde.
        National Toxicology Program. Rep Carcinog Backgr Doc. 2010 Jan; (10-5981):i-512.
      • GenBank. [Nucleic Acids Res. 2000]
        GenBank.
        Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Rapp BA, Wheeler DL. Nucleic Acids Res. 2000 Jan 1; 28(1):15-8.
      See reviews... See all...

      Related information

      • Related Citations
        Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
      • References for this PMC Article
        Citation referenced in PubMed article. Only valid for PubMed citations that are also in PMC.
      • Free in PMC
        Free full text articles in PMC

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...
      You are here: NCBI > Literature > PubMed
      Write to the Help Desk