In vitro binding experiments and analysis of sCD4 with PA. (A) Homonuclear NMR spectrum of free 100 μM PA in the NMR buffer (10 mM KPO4 buffer, pH 7.0, 20% d6-DMSO, 80% D2O). Thirteen PA methylene groups located away from the PA carboxyl terminal resonate at 1.5 ppm. PA methylene groups located close to the PA carboxyl terminal resonate at 2.27 ppm and 1.57 ppm, respectively. (B) STD-NMR signal of PA bound to sCD4. The increase of the methylene STD-NMR signal of PA at 1.5 ppm is observed with the increase of the PA concentration in the sample of 14 μM sCD4 dissolved in the NMR buffer: (1) no PA, (2) molar ratio of sCD4 to PA is 1: 0.1, (3) 1:0.6, (4) 1:0.8, (5) 1:1.2, (6) 1:2, (7) 1:3, (8) 1:5, (9) 1:7, and (10) 1:10. The nonzero STD-NMR signal of PA indicates that PA directly binds to sCD4. PA methelene groups –(CH2)13– that show a large STD-NMR signal constitute the binding epitope of PA for CD4. Peaks from the PA methylene groups located close to the PA carboxyl terminal that are not part of the binding epitope are suppressed in the STD-NMR spectrum. (C) Fractional STD effect of the –(CH2)13– signal at a given PA concentration. The gradual decrease of the STD effect indicates that the PA–sCD4 complex is specific. (D) Fluorescence titration experiment of sCD4 with increasing concentration of PA. This experiment was used to estimate the binding affinity of PA for sCD4. Tryptophan fluorescence was measured using an excitation wavelength of 280 nm. An increase of PA causes a red shift of 2 nm and quenching of the tryptophan fluorescence of sCD4. Inset: Binding isotherm of the normalized sCD4 tryptophan fluorescence with increasing concentration of PA at the emission wavelength of 350 nm. Curve fitting (OriginLab) using a single site binding isotherm approximation resulted in the best value for Kd to be 1.5 ± 0.2 μM.