A neighbor-joining tree was constructed based on the amino acid sequences of representative fungal homeodomain TFs. The numbers at nodes represent the percentage of their occurrence in 10,000 bootstrap replicates; only nodes supported by 50 bootstraps or more are shown. The scale bar shows the number of amino acid differences per site. Subclades containing MoHOXs are shaded, in which MoHOXs and characterized genes from other fungi are shown in bold in red or black, respectively. Green and purple boxes in the domain architecture represent the homeodomains IPR001356 and IPR003120, respectively, and orange boxes are C2H2 zinc finger motifs (IPR007087). Abbreviations for fungal species followed by their GenBank accession numbers are as follows: Mo, Magnaporthe oryzae; Sc, Saccharomyces cerevisiae; Cg, Candida glabrata; Ca, Candida albicans; Fg, Fusarium graminearum; Tr, Trichoderma reesei; Nc, Neurospora crassa; Kl, Kluyveromyces lactis; CnB, Cryptococcus neoformans serotype D B3501-A; Lb, Laccaria bicolor; Pc, Phanerochaete chrysosporium; An, Aspergillus nidulans; Pm, Penicillium marneffeip; Pa, Podospora anserine; Um, Ustilago maydis; Pr, Phytophthora ramorum; Ps, Phytophthora sojae; CnJ, Cryptococcus neoformans serotype D JEC 21; Ec, Encephalitozoon cuniculi; Yl, Yarrowia lipolytica; Sn, Stagonospora nodorum; Fo, Fusarium oxysporum; Fs, Fusarium solani; Cc, Coprinus cinereus.