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Genome Biol. 2009;10(12):R139. doi: 10.1186/gb-2009-10-12-r139. Epub 2009 Dec 4.

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods.

Author information

  • 1Institute of Molecular and Cell Biology, Riia 23, 51010 Tartu, Estonia. adler@ut.ee

Abstract

We present a web resource MEM (Multi-Experiment Matrix) for gene expression similarity searches across many datasets. MEM features large collections of microarray datasets and utilizes rank aggregation to merge information from different datasets into a single global ordering with simultaneous statistical significance estimation. Unique features of MEM include automatic detection, characterization and visualization of datasets that includes the strongest coexpression patterns. MEM is freely available at http://biit.cs.ut.ee/mem/.

PMID:
19961599
[PubMed - indexed for MEDLINE]
PMCID:
PMC2812946
Free PMC Article

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