Timp1 promoter demethylation is associated with Timp1 expression along melanoma genesis. (A) Analysis of Timp1 expression by RT-PCR after in vitro treatment of melan-a cells with 5 µM5-Aza-CdR for 2 days. Every day, the medium was changed, and no significant cell death was observed between the two groups. ma- indicates nontreated melan-a cells (positive control); ma+, melan-a cells treated with 5-Aza-CdR. (B) Schematic representation of CpG sites location in Timp1 promoter and first exon. S1, S2, and S3 indicate CpG dinucleotide analyzed by Ms-SNuPE. Arrow indicates transcriptional start site. (C and D) Quantitative methylation analysis of three CpG sites in the promoter and first exon of Timp1 gene in various DNA samples using Ms-SNuPE. The percentage of methylation at each CpG site was determined by the C:T signal ratio (left axis). The average methylation of the three CpG sites is shown at the bottom of each panel. Methylation levels were quantified on a PhosphorImager Analysis System. In D, the curve in the graph represents Timp1/β-actin mRNA ratio (right axis). skin indicates DNA extracted from mouse normal skin; ma, melan-a cells; ma-5-Aza-CdR, melan-a cells treated with 5-Aza-CdR; D5h, D24h, melan-a cells cultured in suspension for 5 and 24 hours, respectively; 2C, 4C, melan-a cells submitted to two and four substrate adhesion, blockade cycles, respectively; 4C3-, slow-growing melanoma cell line; 4C3+, Tm5, fast-growing melanoma cell lines. P < .0001. P value was determined by one-way ANOVA.