Nucleic Acids Res. 2010 Jan;38(Database issue):D513-7. Epub 2009 Nov 9.

GWIDD: Genome-wide protein docking database.

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Department of Molecular Biosciences, The University of Kansas, Center for Bioinformatics and Lawrence, KS 66047, USA.

Abstract

Structural information on interacting proteins is important for understanding life processes at the molecular level. Genome-wide docking database is an integrated resource for structural studies of protein-protein interactions on the genome scale, which combines the available experimental data with models obtained by docking techniques. Current database version (August 2009) contains 25 559 experimental and modeled 3D structures for 771 organisms spanned over the entire universe of life from viruses to humans. Data are organized in a relational database with user-friendly search interface allowing exploration of the database content by a number of parameters. Search results can be interactively previewed and downloaded as PDB-formatted files, along with the information relevant to the specified interactions. The resource is freely available at http://gwidd.bioinformatics.ku.edu.

PMID:: 19900970; [PubMed - indexed for MEDLINE]
PMCID:: PMC2808876

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Publication Types, MeSH Terms, Substances, Grant Support

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Research Support, N.I.H., Extramural

MeSH Terms

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Viral Proteins

Grant Support

R01 GM074255/GM/NIGMS NIH HHS/United States

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