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    Cell Mol Life Sci. 2010 Feb;67(4):569-79. Epub 2009 Oct 27.

    RNA-seq: from technology to biology.

    Source

    Department of Genetics, Evolution and Environment, UCL Cancer Institute, University College London, Darwin Building, Gower Street, London WC1E 6BT, UK.

    Abstract

    Next-generation sequencing technologies are now being exploited not only to analyse static genomes, but also dynamic transcriptomes in an approach termed RNA-seq. Although these powerful and rapidly evolving technologies have only been available for a couple of years, they are already making substantial contributions to our understanding of genome expression and regulation. Here, we briefly describe technical issues accompanying RNA-seq data generation and analysis, highlighting differences to array-based approaches. We then review recent biological insight gained from applying RNA-seq and related approaches to deeply sample transcriptomes in different cell types or physiological conditions. These approaches are providing fascinating information about transcriptional and post-transcriptional gene regulation, and they are also giving unique insight into the richness of transcript structures and processing on a global scale and at unprecedented resolution.

    PMID:
    19859660
    [PubMed - indexed for MEDLINE]
    PMCID:
    PMC2809939
    Free PMC Article

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