Protein-protein interaction networks: how can a hub protein bind so many different partners?

Trends Biochem Sci. 2009 Dec;34(12):594-600. doi: 10.1016/j.tibs.2009.07.007.

Abstract

How can a single hub protein bind so many different partners? Numerous studies have sought differences between hubs and non-hubs to explain what makes a protein a hub and how a shared hub-binding site can be promiscuous, yet at the same time be specific. Here, we suggest that the problem is largely non-existent and resides in the popular representation of protein interaction networks: protein products derived from a single gene, even if different, are clustered in maps into a single node. This leads to the impression that a single protein binds to a very large number of partners. In reality, it does not; rather, protein networks reflect the combination of multiple proteins, each with a distinct conformation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, N.I.H., Intramural
  • Review

MeSH terms

  • Models, Biological
  • Protein Binding / genetics
  • Protein Binding / physiology*
  • Proteins / chemistry
  • Proteins / genetics
  • Proteins / metabolism*

Substances

  • Proteins