Structure. 2009 Oct 14;17(10):1278-9.

Proteins do not have strong spines after all.

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Synchrotron Radiation Research Section, Macromolecular Crystallography Laboratory, National Cancer Institute, Argonne National Laboratory, Argonne, IL 60439, USA.

Abstract

In this issue of Structure, Berkholz et al. show that the detailed backbone geometry of proteins depends on the local conformation and suggest how this information can be practically used in modeling and refining protein structures.

Comment on

Structure. 2009 Oct 14;17(10):1316-25.

PMID:: 19836327; [PubMed - indexed for MEDLINE]

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Analysis of protein structures reveals regions of rare backbone conformation at functional sites. [Proteins. 2003]
Analysis of protein structures reveals regions of rare backbone conformation at functional sites.
Petock JM, Torshin IY, Weber IT, Harrison RW. Proteins. 2003 Dec 1; 53(4):872-9.
Hydrogen bonding in high-resolution protein structures: a new method to assess NMR protein geometry. [J Am Chem Soc. 2002]
Hydrogen bonding in high-resolution protein structures: a new method to assess NMR protein geometry.
Lipsitz RS, Sharma Y, Brooks BR, Tjandra N. J Am Chem Soc. 2002 Sep 4; 124(35):10621-6.
Conformation dependence of backbone geometry in proteins. [Structure. 2009]
Conformation dependence of backbone geometry in proteins.
Berkholz DS, Shapovalov MV, Dunbrack RL Jr, Karplus PA. Structure. 2009 Oct 14; 17(10):1316-25.
Review Overview and new developments in softer X-ray (2A < lambda < 5A) protein crystallography. [J Synchrotron Radiat. 2004]
Review Overview and new developments in softer X-ray (2A < lambda < 5A) protein crystallography.
Helliwell JR. J Synchrotron Radiat. 2004 Jan 1; 11(Pt 1):1-3. Epub 2003 Nov 28.
Review Conformational issues in the characterization of proteins. [Biotechnol Appl Biochem. 2000]
Review Conformational issues in the characterization of proteins.
Price NC. Biotechnol Appl Biochem. 2000 Feb; 31 ( Pt 1):29-40.

See reviews... See all...

Cited by 1 PubMed Central article

Using a conformation-dependent stereochemical library improves crystallographic refinement of proteins. [Acta Crystallogr D Biol Crysta...]
Using a conformation-dependent stereochemical library improves crystallographic refinement of proteins.
Tronrud DE, Berkholz DS, Karplus PA. Acta Crystallogr D Biol Crystallogr. 2010 Jul; 66(Pt 7):834-42. Epub 2010 Jun 19.

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