Spatial relationships of PG within the periplasmic space. White arrowhead, PG; black arrowhead, flagellar filament; red arrowhead, hook; asterisk, basal bodies. In panels A, B, and D, slices 1.8 nm thick are from different tomograms. (A) The location of the PG between the flagellum and the cytoplasmic membrane; an intensity profile along the direction of the yellow arrow is shown in panel C. (B and D) The PG appears to attach near the P-collar and stator of the basal body. Note that the hook is clearly seen in panel D. An intensity profile along the direction of the yellow arrow in panel D is shown in panel E. Abbreviations used in the intensity plots in panels C and E: om, outer membrane; f, periplasmic flagellum; pg, peptidoglycan; cm, cytoplasmic membrane. (F and H) Slices 10 nm thick, both from the same tomogram, showing the three basal bodies that were cut out as subvolumes, aligned with each other, and rotationally averaged in 3D to create the low-resolution model shown in panel G. (G) A central section of the model is interpreted according to the methods described by Murphy et al. (79) as follows: r, rod; R, rotor; s, stator; p, P-collar; c, C-ring; e, export complex. The light green areas (also indicated by yellow arrows) depict the sites of PG binding at the boundaries between the P-collar and the stator. (H) Central slices from the tomographic subvolumes containing the left two basal bodies (boxes) were inserted into the central tomographic slice containing the right-most basal body; the corresponding section from the model in panel G was then superimposed on each basal body to create the final composite image. Bars, 100 nm (the scale of panel D is the same as that in panel B).