Photophysical characterization of oligopyrene modules for DNA-based nanosystems

Photochem Photobiol Sci. 2009 Oct;8(10):1448-54. doi: 10.1039/b9pp00016j. Epub 2009 Aug 7.

Abstract

The photophysics of free pyrenedicarboxamide (Py-DCA) in solution as well as of single-stranded and double-stranded oligonucleotides (ss and ds ONs) containing 1-7 pyrene building blocks per strand were studied by steady-state and time-resolved fluorescence spectroscopy. It was found that the fluorescence quantum yield Phi(F) of free Py-DCA chromophore in solution is rather high (Phi(F) = 0.44). However, after incorporation of the chromophore into a ss ON the monomeric chromophore fluorescence is quenched more than 40-fold due to electron-transfer reactions with ON bases. An increase of the number n of neighboring pyrenes in an ON results in Phi(F) growth up to 0.25 at n = 6. Starting from n = 2, all fluorescence belongs mainly to excimer formed by pyrene chromophores. Sections composed of multiple pyrenes may be considered as robust functional entities that may serve as independent modules in DNA-based, functional nano-architectures.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Absorption
  • Amides / chemistry
  • Base Sequence
  • DNA / chemistry*
  • DNA / genetics
  • DNA, Single-Stranded / chemistry
  • DNA, Single-Stranded / genetics
  • Nanotechnology*
  • Nucleic Acid Conformation
  • Oligodeoxyribonucleotides / chemistry
  • Oligodeoxyribonucleotides / genetics
  • Pyrenes / chemistry*
  • Spectrometry, Fluorescence
  • Time Factors

Substances

  • Amides
  • DNA, Single-Stranded
  • Oligodeoxyribonucleotides
  • Pyrenes
  • DNA
  • pyrene