Display Settings:


Send to:

Choose Destination
See comment in PubMed Commons below
Bioinformatics. 2009 Oct 1;25(19):2617-8. doi: 10.1093/bioinformatics/btp464. Epub 2009 Aug 3.

Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks.

Author information

  • 1Biotechnology Center, TU Dresden, Dresden, Germany. Mathieu.clement-ziza@biotec.tu-dresden.de


Genoscape is an open-source Cytoscape plug-in that visually integrates gene expression data sets from GenoScript, a transcriptomic database, and KEGG pathways into Cytoscape networks. The generated visualisation highlights gene expression changes and their statistical significance. The plug-in also allows one to browse GenoScript or import transcriptomic data from other sources through tab-separated text files. Genoscape has been successfully used by researchers to investigate the results of gene expression profiling experiments.


Genoscape is an open-source software freely available from the Genoscape webpage (http://www.pasteur.fr/recherche/unites/Gim/genoscape/). Installation instructions and tutorial can also be found at this URL.

[PubMed - indexed for MEDLINE]
Free PMC Article

Images from this publication.See all images (1)Free text

Fig. 1.
PubMed Commons home

PubMed Commons

How to join PubMed Commons

    Supplemental Content

    Icon for HighWire Icon for PubMed Central
    Loading ...
    Write to the Help Desk