A novel virus of the late blight pathogen, Phytophthora infestans, with two RNA segments and a supergroup 1 RNA-dependent RNA polymerase

Virology. 2009 Sep 15;392(1):52-61. doi: 10.1016/j.virol.2009.06.040. Epub 2009 Jul 25.

Abstract

Double-stranded RNA representing four distinct electrophoretic patterns was found in a screen of Phytophthora infestans isolates. Two dsRNAs that always appeared together were sequenced. RNA 1, which was 3160 nt plus a poly (A) tail, contained a single deduced ORF with the potential to encode a polyprotein of 977 aa with motifs characteristic of supergroup I viral RdRps. The 2776 nt, polyadenylated RNA2 contained an ORF with a potential to encode a polyprotein of 847 aa including a possible trypsin-like serine protease, and a second putative ORF of unknown function. An alternative form of RNA2, in which a 19-nt stretch was replaced by a 9-nt sequence, was detected in 4 of 17 clones sequenced. Based on genome structure and phylogenetic analysis, this virus did not fit into any known virus family and we tentatively named it Phytophthora infestans RNA virus 1 (PiRV-1).

MeSH terms

  • 3' Untranslated Regions
  • 5' Untranslated Regions
  • Amino Acid Sequence
  • Base Sequence
  • Genome, Viral
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Phylogeny
  • Phytophthora infestans / pathogenicity*
  • Phytophthora infestans / virology*
  • RNA Viruses / classification
  • RNA Viruses / enzymology
  • RNA Viruses / genetics*
  • RNA Viruses / isolation & purification*
  • RNA, Viral / chemistry
  • RNA, Viral / genetics
  • RNA, Viral / isolation & purification
  • RNA-Dependent RNA Polymerase / classification
  • RNA-Dependent RNA Polymerase / genetics
  • RNA-Dependent RNA Polymerase / isolation & purification*
  • Sequence Homology, Amino Acid
  • Sequence Homology, Nucleic Acid
  • Serine Endopeptidases / genetics

Substances

  • 3' Untranslated Regions
  • 5' Untranslated Regions
  • RNA, Viral
  • RNA-Dependent RNA Polymerase
  • Serine Endopeptidases