Identification of enoxacin by molecular docking. A homology model of human V-ATPase subunit B is shown in the top panel colored based on sequence similarity to profilin-1 (graded blue, cyan, green, yellow, orange, red to represent low sequence similarity (blue) to high (red) based on a BLOSUM62 matrix. Magenta spheres depict the site selected for molecular docking. The box represents boundaries of the scoring grid used for molecular docking. The chemical structure of enoxacin is shown in the inset of the top panel. The bottom panel shows enoxacin in the orientation posed by molecular docking using DOCK6.1 (UCSF), yellow for carbon, blue for nitrogen, red for oxygen, light blue for fluorine, white for hydrogen. The molecular surface of the V-ATPase B2 is colored cyan for carbon, blue for nitrogen, red for oxygen. Enoxacin may interact with a structural pocket in V-ATPase comprised of side chains from Tyr68, Val89, Thr268, Ile269, Glu308, and Arg314. In addition to van der Waals contacts between these residues and enoxacin, a H bond interaction is predicted between the Oε1 atom of Arg314 and N4 of enoxacin.