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J Membr Biol. 2009 Jun;229(3):115-30. doi: 10.1007/s00232-009-9176-2. Epub 2009 Jun 23.

Bioinformatic characterization of p-type ATPases encoded within the fully sequenced genomes of 26 eukaryotes.

Author information

  • 1Department of Molecular Biology, Division of Biological Sciences, University of California at San Diego, 9500 Gilman Drive, La Jolla, 92093-0116, CA, USA. markthever@gmail.com

Abstract

P-type ATPases play essential roles in numerous processes, which in humans include nerve impulse propagation, relaxation of muscle fibers, secretion and absorption in the kidney, acidification of the stomach and nutrient absorption in the intestine. Published evidence suggests that uncharacterized families of P-type ATPases with novel specificities exist. In this study, the fully sequenced genomes of 26 eukaryotes, including animals, plants, fungi and unicellular eukaryotes, were analyzed for P-type ATPases. We report the organismal distributions, phylogenetic relationships, probable topologies and conserved motifs of nine functionally characterized families and 13 uncharacterized families of these enzyme transporters. We have classified these proteins according to the conventions of the functional and phylogenetic IUBMB-approved transporter classification system ( www.tcdb.org , Saier et al. in Nucleic Acids Res 34:181-186, 2006; Nucleic Acids Res 37:274-278, 2009).

PMID:
19548020
[PubMed - indexed for MEDLINE]
PMCID:
PMC2709905
Free PMC Article

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