J Bacteriol. 2009 Jul;191(14):4693-4. doi: 10.1128/JB.00447-09. Epub 2009 May 15.

Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700.

Di Bonaventura MP, DeSalle R, Pop M, Nagarajan N, Figurski DH, Fine DH, Kaplan JB, Planet PJ.

Source

Sackler Institute for Comparative Genetics, American Museum of Natural History, New York, NY 10024, USA.

Abstract

We report the finished and annotated genome sequence of Aggregatibacter aphrophilus strain NJ8700, a strain isolated from the oral flora of a healthy individual, and discuss characteristics that may affect its dual roles in human health and disease. This strain has a rough appearance, and its genome contains genes encoding a type VI secretion system and several factors that may participate in host colonization.

PMID:: 19447908; [PubMed - indexed for MEDLINE]
PMCID:: PMC2704734

Free PMC Article

Publication Types, MeSH Terms, Substances, Secondary Source ID

Publication Types

Research Support, U.S. Gov't, Non-P.H.S.

MeSH Terms

Substances

DNA, Bacterial

Secondary Source ID

GENBANK/CP001607

LinkOut - more resources

Full Text Sources

Other Literature Sources

COS Scholar Universe

Molecular Biology Databases

REBASE ref# 11128 - REBASE - The Restriction Enzyme Database

Miscellaneous

Supplemental Content

Save items

Click here to read article using PubReader

Related citations in PubMed

Genome sequence of Aggregatibacter actinomycetemcomitans RHAA1, isolated from a rhesus macaque, an Old World primate. [J Bacteriol. 2012]
Genome sequence of Aggregatibacter actinomycetemcomitans RHAA1, isolated from a rhesus macaque, an Old World primate.
Karched M, Furgang D, Planet PJ, DeSalle R, Fine DH. J Bacteriol. 2012 Mar; 194(5):1275-6.
Reclassification of Actinobacillus actinomycetemcomitans, Haemophilus aphrophilus, Haemophilus paraphrophilus and Haemophilus segnis as Aggregatibacter actinomycetemcomitans gen. nov., comb. nov., Aggregatibacter aphrophilus comb. nov. and Aggregatibacter segnis comb. nov., and emended description of Aggregatibacter aphrophilus to include V factor-dependent and V factor-independent isolates. [Int J Syst Evol Microbiol. 2006]
Reclassification of Actinobacillus actinomycetemcomitans, Haemophilus aphrophilus, Haemophilus paraphrophilus and Haemophilus segnis as Aggregatibacter actinomycetemcomitans gen. nov., comb. nov., Aggregatibacter aphrophilus comb. nov. and Aggregatibacter segnis comb. nov., and emended description of Aggregatibacter aphrophilus to include V factor-dependent and V factor-independent isolates.
Nørskov-Lauritsen N, Kilian M. Int J Syst Evol Microbiol. 2006 Sep; 56(Pt 9):2135-46.
The complete genome sequence of Actinobacillus pleuropneumoniae L20 (serotype 5b). [J Bacteriol. 2008]
The complete genome sequence of Actinobacillus pleuropneumoniae L20 (serotype 5b).
Foote SJ, Bossé JT, Bouevitch AB, Langford PR, Young NM, Nash JH. J Bacteriol. 2008 Feb; 190(4):1495-6. Epub 2007 Dec 7.
Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103. [J Bacteriol. 2009]
Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103.
Morita H, Toh H, Oshima K, Murakami M, Taylor TD, Igimi S, Hattori M. J Bacteriol. 2009 Dec; 191(24):7630-1. Epub 2009 Oct 9.
Review Insights on biology and evolution from microbial genome sequencing. [Genome Res. 2005]
Review Insights on biology and evolution from microbial genome sequencing.
Fraser-Liggett CM. Genome Res. 2005 Dec; 15(12):1603-10.

See reviews... See all...

Cited by 3 PubMed Central articles

A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation. [BMC Res Notes. 2012]
A cost-effective and universal strategy for complete prokaryotic genomic sequencing proposed by computer simulation.
Jiang J, Li J, Kwan HS, Au CH, Wan Law PT, Li L, Kam KM, Lun Ling JM, Leung FC. BMC Res Notes. 2012 Jan 31; 5:80. Epub 2012 Jan 31.
Identification of the pangenome and its components in 14 distinct Aggregatibacter actinomycetemcomitans strains by comparative genomic analysis. [PLoS One. 2011]
Identification of the pangenome and its components in 14 distinct Aggregatibacter actinomycetemcomitans strains by comparative genomic analysis.
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C. PLoS One. 2011; 6(7):e22420. Epub 2011 Jul 19.
Finishing genomes with limited resources: lessons from an ensemble of microbial genomes. [BMC Genomics. 2010]
Finishing genomes with limited resources: lessons from an ensemble of microbial genomes.
Nagarajan N, Cook C, Di Bonaventura M, Ge H, Richards A, Bishop-Lilly KA, DeSalle R, Read TD, Pop M. BMC Genomics. 2010 Apr 16; 11:242. Epub 2010 Apr 16.

Related information

Related Citations
Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
Assembly
Assembly
Gene
Gene records that cite the current articles. Citations in Gene are added manually by NCBI or imported from outside public resources.
Gene (nucleotide/PMC)
Records in Gene identified from shared sequence and PMC links.
Nucleotide
Primary database (GenBank) nucleotide records reported in the current articles as well as Reference Sequences (RefSeqs) that include the articles as references.
Nucleotide (Weighted)
Nucleotide records associated with the current articles through the Gene database. These are the related sequences on the Gene record that are added manually by NCBI.
Protein (RefSeq)
NCBI protein Reference Sequences (RefSeqs) that are cited in the current articles, included in the corresponding Gene Reference into Function, or that include the PubMed articles as references.
Protein (Weighted)
Protein records associated with the current articles through related Gene database records. These are the related sequences on the Gene record that are added manually by NCBI.
References for this PMC Article
Citation referenced in PubMed article. Only valid for PubMed citations that are also in PMC.
Related Project
Related Projects
Taxonomy via GenBank
Taxonomy records associated with the current articles through taxonomic information on related molecular database records (Nucleotide, Protein, Gene, SNP, Structure).
Protein
Protein translation features of primary database (GenBank) nucleotide records reported in the current articles as well as Reference Sequences (RefSeqs) that include the articles as references.
Genome
Genome records that include the current articles as references. These are typically the articles that report the sequencing and analysis of the genome.
Free in PMC
Free full text articles in PMC
Cited in PMC
Full-text articles in the PubMed Central Database that cite the current articles.

Recent activity

Clear Turn Off Turn On

Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700.
Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700.
J Bacteriol. 2009 Jul ;191(14):4693-4. doi: 10.1128/JB.00447-09. Epub 2009 May 15 .

PubMed

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

PubMed

Result Filters

Display Settings:

Send to: