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Bioinformatics. 2009 Aug 1;25(15):1961-2. doi: 10.1093/bioinformatics/btp313. Epub 2009 May 12.

Generating linkage mapping files from Affymetrix SNP chip data.

Author information

  • 1Bioinformatics Division, The Walter and Eliza Hall Institute, Parkville, 3052 VIC, Australia. bahlo@wehi.edu.au

Abstract

SUMMARY:

LINKDATAGEN is a perl tool that generates linkage mapping input files for five different linkage mapping tools using data from all 11 HAPMAP Phase III populations. It provides rudimentary error checks and is easily amended for personal linkage mapping preferences.

AVAILABILITY AND IMPLEMENTATION:

LINKDATAGEN is available from http://bioinf.wehi.edu.au/software/linkdatagen/ with accompanying annotation files, reference manual and test dataset.

PMID:
19435744
[PubMed - indexed for MEDLINE]
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