A transcript of FPN1 that lacked an IRE was identified in mouse. (A) Schematic representation of genomic (top) and transcript structure (bottom) of FPN1. FPN1 has a total of nine exons (boxes 1b, 1a, 2 through 8, introns depicted as lines), and the IRE and AUG codon are located in exon 1a. By alternative usage of exon 1a or 1b, two FPN1 transcripts are generated. The FPN1A transcript extends from exon1a, and includes exons 2 to 8, producing a transcript that contains an IRE in its 5'UTR. The FPN1B transcript commences with exon 1b and includes a portion of exon 1a that is 3' of the IRE (from nucleotide -145, -102 or -64 depending on different acceptor sites), as well as exons 2 to 8, producing a transcript that does not have an IRE. Primers F1, F2 and R, as indicated on the graphic were used for PCR amplification of FPN1A and FPN1B. (B) PCR amplification of FPN1A (lanes 2, 5 and 8) and FPN1B (lanes 3, 6 and 9) using cDNA generated from spleen, kidney and duodenum revealed three bands which corresponded to the usage of three distinct acceptor sites within exon 1a of FPN1B. FPN1 was amplified by a pair of primers located within the ORF (lane 4, 7 and 10). The expected sizes for each of the bands were 596bp (FPN1), 356bp (FPN1A), and 312bp, 269bp, 231bp (FPN1B). PCR products were separated on a 2% agarose gel. (C) Expression of the FPN1B reporter construct was not repressed in iron starvation conditions. The 5'UTRs of FPN1A and FPN1B were cloned into the pGL3 luciferase vector, and then 1 μg of those vectors with 0.1 μg of renilla luciferase vector were transfected into IEC6 cells. One day later those cells were treated with either 200 μM, 100 μM FAC, 100 μM, or 200 μM DFO for 24h. The luciferase activity was measured by a dual luciferase activity assay. FPN1B1, B2 and B3 represent the longest, middle and shortest transcripts, respectively. Data are presented as mean ± SD.