Bioinformatics. 2009 Jul 15;25(14):1831-2. Epub 2009 Apr 27.

Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison.

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Department of Statistics, University of Oxford, 1 South Parks Road, Oxford, OX1 3TG, UK.

Abstract

SUMMARY: We present a tool called Rahnuma for prediction and analysis of metabolic pathways and comparison of metabolic networks. Rahnuma represents metabolic networks as hypergraphs and computes all possible pathways between two or more metabolites. It provides an intuitive way to answer biological ques- tions focusing on differences between organisms or the evolution of different species by allowing pathway-based metabolic network comparisons at an organism as well as at a phylogenetic level. AVAILABILITY: Rahnuma is available online at http://portal.stats.ox.ac.uk:8080/rahnuma/.

PMID:: 19398450; [PubMed - indexed for MEDLINE]

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BB/E007872/1/Biotechnology and Biological Sciences Research Council/United Kingdom

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