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Bioinformatics. 2009 May 15;25(10):1335-7. doi: 10.1093/bioinformatics/btp157. Epub 2009 Mar 23.

Infernal 1.0: inference of RNA alignments.

Author information

  • 1HHMI Janelia Farm Research Campus, Ashburn, VA 20147, USA. nawrockie@janelia.hhmi.org

Erratum in

  • Bioinformatics. 2009 Jul 1;25(13):1713.

Abstract

SUMMARY:

INFERNAL builds consensus RNA secondary structure profiles called covariance models (CMs), and uses them to search nucleic acid sequence databases for homologous RNAs, or to create new sequence- and structure-based multiple sequence alignments.

AVAILABILITY:

Source code, documentation and benchmark downloadable from http://infernal.janelia.org. INFERNAL is freely licensed under the GNU GPLv3 and should be portable to any POSIX-compliant operating system, including Linux and Mac OS/X.

PMID:
19307242
[PubMed - indexed for MEDLINE]
PMCID:
PMC2732312
Free PMC Article

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