Effects of several chromatin-related genes on transcription of the centromere-proximal rDNA gene. (A) Reporter gene assay with wild type (YRH4), bre1-Tn (PS1-26), rad6Δ (YRH698), set1Δ (YRH132), set2Δ (YRH134), paf1Δ (YRH164), and a set2Δ bre1-Tn double mutant (YRH265). (B) Reporter gene assay with wild type (YRH4), rpd3Δ (YRH5), pho23-Tn (PS1-76), ume6Δ (YRH51), rco1Δ (YRH152), hos2-Tn (PS1-120), hos1Δ (YRH142), and hos3Δ (YRH143). (C) qRT–PCR results of several candidates highlighted in A. Wild type was normalized to 1.0. (D) Pulsed-field gel electrophoresis analysis of the rDNA array size in wild type (YRH4), 42-copy rDNA control (NOY886), 143-copy rDNA control (NOY1051), rpd3Δ (YRH5), hos2-Tn (PS1-120), and bre1-Tn (PS1-26) strains. An asterisk indicates a P-value > 0.05.