Phylogenies of glycoside hydrolase (GH 61, GH10), glyoxal oxidase/copper radical oxidase (GLOX), laccase (LAC) and related multicopper oxidase, and low redox peroxidase (LRP) and related class II fungal peroxidases from complete genomes of P. placenta (Pospl1), P. chrysosporium (Phchr1), C. cinerea (CC1G), L. bicolor (Lacbi1), C. neoformans (CNAG), U. maydis (UM), M. grisea (MGG), Stagonospora nodorum (SNOG), T. reesei (Trire2), and Pichia stipitis (Picst3). Datasets were assembled by using BLAST (with qUniProtKB query sequences Q5XXE5, O60206, P36218, Q00023, O14405, Q01772 and Q12718), with a cut-off value of E-06. Parsimony (PAUP* 4.0; 10,000 heuristic searches, 1000 bootstrap replicates), maximum likelihood (RAxML; 1000 bootstrap replicates, with models suggested by ProtTest), and Bayesian (MrBayes v3.1.2; 2 runs of 4 chains, 10 million generations each, with mixed protein models) support values are indicated in the order MP/PP/ML. Topologies shown are from Bayesian phylogenetic analyses. An alternative topology from parsimony analysis is shown for part of the GH10 phylogeny. Inferred gene losses, duplication events (paralogy), and speciation events (orthology) are indicated within Postia and Phanerochaete only.