Bioinformatics. 2009 Mar 1;25(5):690-1. doi: 10.1093/bioinformatics/btp025. Epub 2009 Jan 15.

MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions.

Chautard E, Ballut L, Thierry-Mieg N, Ricard-Blum S.

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UMR 5086 CNRS-Université Lyon 1, 7 passage du Vercors, 69367 Lyon Cedex 07, France.

Abstract

SUMMARY:

MatrixDB (http://matrixdb.ibcp.fr) is a database reporting mammalian protein-protein and protein-carbohydrate interactions involving extracellular molecules. It takes into account the full interaction repertoire of the extracellular matrix involving full-length molecules, fragments and multimers. The current version of MatrixDB contains 1972 interactions corresponding to 4412 experiments and involving 259 extracellular biomolecules.

AVAILABILITY:

MatrixDB is freely available at http://matrixdb.ibcp.fr

PMID:: 19147664; [PubMed - indexed for MEDLINE]
PMCID:: PMC2647840

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