A containment laboratory unit for research with aerosols of group 2 pathogenic microorganisms is described. The design criteria are based on current UK guidelines, which imply containment at group 3 level during aerosol production, storage, exposure of animals and sampling. Within the aerosol laboratory, primary containment is provided by a Henderson apparatus operating at a negative pressure to the external environment. Flexible film isolators under negative pressure are used for all hazardous microbiological work, e.g. tissue homogenization, and for housing infected laboratory rodents. A novel feature of the animal isolator is the separate ventilation of each cage, which minimizes the risk of cross-infection by aerosol transmission and ensures a similar environment within each cage. The results of an intentional release of a cloud of non-pathogenic microorganisms are presented to show the effectiveness of the containment barriers. Recommendations are given for the safe operation of a containment unit based upon practical experience.