GFAP image analysis protocol. Coronal rat brain sections were analyzed with a computer-based system for their relative neocortical (left, experimental, compared to right, control) area of GFAP staining. Staining was measured on a linear gray scale (illustrated by two upper rows of blue color-coded images) from a darkest value threshold, where GFAP visualization began (first row, first image) to a lightest value threshold, where GFAP visualization reached saturation in the lighter-stained neocortex (second row, third image). This gray scale range was divided into six equally sized increments (shown as an accumulative increase in blue area above and with corresponding individual incremental areas in the two lower rows). To enhance visualization, six incremental areas of GFAP staining were color coded (two lower rows). Beginning with darkest shading (third row, first image; shaded with dark brown and reflecting the most intense GFAP staining), each progressively less intense incremental area was shaded a different color with the lightest intensity of GFAP staining shaded orange (fourth row, third image). Most of the GFAP area visualized occurred within the first three lighter zones. These individual areas were given a relative weighting factor to reflect their differences in staining intensity: The darkest area was multiplied by 6, and each progressively lighter increment was multiplied by either 5, 4, 3, 2, or 1, respectively. Then weighted areas were added together, and the resultant sum was normalized by dividing this value by the total area measured for a given cortical side. Finally, experimental-side values were divided by the corresponding control-side values, and these ratios were averaged for the nine sections measured for each animal. Thus, a single number was generated for each animal, which gave a weighted, normalized, and relative estimate of the area of GFAP staining in the experimental neocortex as compared to the control cortex.