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Genome Biol. 2008;9(11):R159. doi: 10.1186/gb-2008-9-11-r159. Epub 2008 Nov 12.

ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets.

Author information

  • 1Center for Systems and Synthetic Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, 1 University Station A4800, Austin, Texas 78712, USA. pkillion@mail.utexas.edu

Abstract

ArrayPlex is a software package that centrally provides a large number of flexible toolsets useful for functional genomics, including microarray data storage, quality assessments, data visualization, gene annotation retrieval, statistical tests, genomic sequence retrieval and motif analysis. It uses a client-server architecture based on open source components, provides graphical, command-line, and programmatic access to all needed resources, and is extensible by virtue of a documented application programming interface. ArrayPlex is available at http://sourceforge.net/projects/arrayplex/.

PMID:
19014503
[PubMed - indexed for MEDLINE]
PMCID:
PMC2614491
Free PMC Article

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