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Bioinformatics. 2009 Jan 1;25(1):119-20. doi: 10.1093/bioinformatics/btn578. Epub 2008 Nov 5.

DNAPlotter: circular and linear interactive genome visualization.

Author information

  • 1Wellcome Trust Sanger Institute, CB10 1SA and European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK. artemis@sanger.ac.uk

Abstract

DNAPlotter is an interactive Java application for generating circular and linear representations of genomes. Making use of the Artemis libraries to provide a user-friendly method of loading in sequence files (EMBL, GenBank, GFF) as well as data from relational databases, it filters features of interest to display on separate user-definable tracks. It can be used to produce publication quality images for papers or web pages.

AVAILABILITY:

DNAPlotter is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute web sites: http://www.sanger.ac.uk/Software/Artemis/circular/

PMID:
18990721
[PubMed - indexed for MEDLINE]
PMCID:
PMC2612626
Free PMC Article
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