Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information
    Cell. 2008 Oct 17;135(2):295-307. doi: 10.1016/j.cell.2008.09.033.

    The RNA polymerase "switch region" is a target for inhibitors.

    Source

    Howard Hughes Medical Institute, Rutgers University, Piscataway, NJ 08854, USA.

    Abstract

    The alpha-pyrone antibiotic myxopyronin (Myx) inhibits bacterial RNA polymerase (RNAP). Here, through a combination of genetic, biochemical, and structural approaches, we show that Myx interacts with the RNAP "switch region"--the hinge that mediates opening and closing of the RNAP active center cleft--to prevent interaction of RNAP with promoter DNA. We define the contacts between Myx and RNAP and the effects of Myx on RNAP conformation and propose that Myx functions by interfering with opening of the RNAP active-center cleft during transcription initiation. We further show that the structurally related alpha-pyrone antibiotic corallopyronin (Cor) and the structurally unrelated macrocyclic-lactone antibiotic ripostatin (Rip) function analogously to Myx. The RNAP switch region is distant from targets of previously characterized RNAP inhibitors, and, correspondingly, Myx, Cor, and Rip do not exhibit crossresistance with previously characterized RNAP inhibitors. The RNAP switch region is an attractive target for identification of new broad-spectrum antibacterial therapeutic agents.

    Comment in

    PMID:
    18957204
    [PubMed - indexed for MEDLINE]
    PMCID:
    PMC2580802
    Free PMC Article

    Images from this publication.See all images (5)Free text

    Fig. 1
    Fig. 2
    Fig. 3
    Fig. 4
    Fig. 5

      Supplemental Content

      Icon for Elsevier Science Icon for PubMed Central

      Save items

      Structures reported by this article

      Recent activity

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...
      Write to the Help Desk