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Nucleic Acids Res. 2009 Jan;37(Database issue):D983-6. doi: 10.1093/nar/gkn709. Epub 2008 Oct 8.

AthaMap, integrating transcriptional and post-transcriptional data.

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  • 1Institut für Genetik,Technische Universität Braunschweig, Spielmannstr. 7, D-38106 Braunschweig, Germany.

Abstract

The AthaMap database generates a map of predicted transcription factor binding sites (TFBS) for the whole Arabidopsis thaliana genome. AthaMap has now been extended to include data on post-transcriptional regulation. A total of 403,173 genomic positions of small RNAs have been mapped in the A. thaliana genome. These identify 5772 putative post-transcriptionally regulated target genes. AthaMap tools have been modified to improve the identification of common TFBS in co-regulated genes by subtracting post-transcriptionally regulated genes from such analyses. Furthermore, AthaMap was updated to the TAIR7 genome annotation, a graphic display of gene analysis results was implemented, and the TFBS data content was increased. AthaMap is freely available at http://www.athamap.de/.

PMID:
18842622
[PubMed - indexed for MEDLINE]
PMCID:
PMC2686474
Free PMC Article
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