Differential Cdx2 mRNA expression at the eight-cell stage in blastomeres derived from ME and EM embryos. (A) Tracking of blastomere divisions and the harvesting of 2/8 blastomere pairs. One two-cell blastomere was injected with rhodamine dextran. In vitro cultured embryos were observed every 15–20 min and subsequently sorted based on the division plane orientation of the first dividing blastomere, with respect to the AV axis (either M or E) as indicated by the position of the polar body. The second division was similarly classified, thus identifying ME and EM embryos (the few MM and EE embryos were not analyzed). At the four-cell stage, the blastomere in the vegetal (V) position was injected with FITC-conjugated dextran (green). Embryos were cultured until the eight-cell stage had occurred, disaggregated into 4× 2/8 pairs per embryo, the pairs were sorted according to type as shown, and total RNA was extracted from each 2/8 pair for gene expression analysis. (B) Taqman real-time PCR analysis of 68 individual 2/8 blastomere pairs (as defined in A) from 10 ME and seven EM eight-cell embryos. The expression, in technical triplicate, of Oct4, Cdx2, Sall4, and Esrrb was determined in each 2/8 blastomere pair. The data are presented as a ratio against the Oct4 values. Note that the Cdx2:Oct4 ratio is both higher and more variable in ME than EM embryos. (C) The averaged ratios (+SD) of all the AV 2/8 blastomeres compared with those for the all combined A plus V samples shown separately for the ME and EM embryos. Note that for ME-derived 2/8 blastomere pairs, relative Cdx2 levels are significantly higher in combined A plus V blastomeres than in AV blastomeres (when distributions are compared in a Mann-Whitney test; P < 0.001) and that relative Sall4 levels are lower for the ME-derived 2/8 pairs than for the EM-derived 2/8 pairs regardless of type (P < 0.001; Student’s t-test). (D) Tabulated data from B and C showing mean, median, SD, minimum, maximum, and upper (Q1) and lower (Q3) quartile values for pooled expression data of AV1 plus AV2, and for pooled A plus V blastomeres in ME and EM embryos. P-values are shown for a Mann-Whitney test, between the datasets from M and E blastomeres within ME and EM embryos.