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Bioinformatics. 2008 Nov 15;24(22):2634-5. doi: 10.1093/bioinformatics/btn497. Epub 2008 Sep 23.

DOCKGROUND protein-protein docking decoy set.

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  • 1Center for Bioinformatics, The University of Kansas, 2030 Becker Drive, Lawrence, KS 66047, USA.

Abstract

A protein-protein docking decoy set is built for the Dockground unbound benchmark set. The GRAMM-X docking scan was used to generate 100 non-native and at least one near-native match per complex for 61 complexes. The set is a publicly available resource for the development of scoring functions and knowledge-based potentials for protein docking methodologies.

AVAILABILITY:

The decoys are freely available for download at http://dockground.bioinformatics.ku.edu/UNBOUND/decoy/decoy.php

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