Display Settings:

Format

Send to:

Choose Destination
See comment in PubMed Commons below
J Chem Inf Model. 2008 Sep;48(9):1833-9. doi: 10.1021/ci800094a. Epub 2008 Sep 5.

Accurate and interpretable computational modeling of chemical mutagenicity.

Author information

  • 1Cancer Research Institute, University of California, San Francisco, 2340 Sutter Street, San Francisco, California 94143-0128, USA. james.langham@jainlab.org

Abstract

We describe a method for modeling chemical mutagenicity in terms of simple rules based on molecular features. A classification model was built using a rule-based ensemble method called RuleFit, developed by Friedman and Popescu. We show how performance compares favorably against literature methods. Performance was measured through the use of cross-validation and testing on external test sets. All data sets used are publicly available. The method automatically generated transparent rules in terms of molecular structure that agree well with known toxicology. While we have focused on chemical mutagenicity in demonstrating this method, we anticipate that it may be more generally useful in modeling other molecular properties such as other types of chemical toxicity.

PMID:
18771257
[PubMed - indexed for MEDLINE]
PMCID:
PMC2753474
Free PMC Article
PubMed Commons home

PubMed Commons

0 comments
How to join PubMed Commons

    Supplemental Content

    Icon for American Chemical Society Icon for PubMed Central
    Loading ...
    Write to the Help Desk