Organization of the MurNAc etherase chromosomal region of E. coli and nucleotide sequence of the murR-murQ intergenic (promoter/operator) region. (A) The genes of the MurNAc etherase operon (drawn to scale) and their encoded proteins, respectively, are the following: murQ, MurNAc etherase; murP, MurNAc-specific EIIBC of the PTS; pbp4B, low-affinity penicillin binding protein 4B. Upstream of murQ and divergently transcribed is murR, which encodes the transcriptional regulator of the MurNAc etherase operon. Horizontal arrows indicate the convergent transcription start sites for murQ (PQ1) and murR (PR), as well as the predicted start site for dacB transcription (P4B). The predicted Rho-independent termination signal downstream of pbp4B is indicated by a lollipop symbol. (B) The nucleotide sequence of the murR-murQ intergenic region of E. coli MG1655 is shown. The murQ transcriptional start sites (PQ1 and PQ2) as well as the murR start site (PR), which were identified in this work, are indicated. Gray boxes highlight the −10/−35 promoter regions relative to PQ1, and open boxes indicate those relative to PQ2 and PR. The hatched box indicates the putative CAP binding site −71.5 bp upstream of PQ1, with the consensus CAP binding motif shown beneath. The inverted repeats (IR1 and IR2), which were identified in this work as constituting MurR binding sites, are indicated. The putative ribosome binding sites (Shine-Dalgarno sequences [SD]) are underlined, and the start codons of murR and murQ are shown (black boxes).