Bioinformatics. 2008 Oct 1;24(19):2252-3. Epub 2008 Aug 19.

A toolkit for analysing large-scale plant small RNA datasets.

Moxon S, Schwach F, Dalmay T, Maclean D, Studholme DJ, Moulton V.

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School of Computing Sciences, School of Biological Sciences, University of East Anglia, Norwich NR47TJ, UK.

Abstract

Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci. AVAILABILITY: The tools are freely available for use at http://srna-tools.cmp.uea.ac.uk.

PMID:: 18713789; [PubMed - indexed for MEDLINE]

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BB/E004091/1/Biotechnology and Biological Sciences Research Council/United Kingdom

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